The administrator confirmed that if LD_LIBRARY_PATH is set in in the global RStudio Server configuration file (in a test environment) everything seems to work correctly. It seems as if rstudio is not respecting my LD_LIBRARY_PATH. PATH = /usr/local/gcc/7.2.0/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin Here is some potentially relevant output: This occurs despite being able to successfully reinstall rstan through rstudio. lib64/libstdc++.so.6: version `CXXABI_1.3.8’ not found (required by /home/cquirk/R/x86_64-redhat-linux-gnu-library/3.5/rstan/libs/rstan.so) Unable to load shared object ‘/home/cquirk/R/x86_64-redhat-linux-gnu-library/3.5/rstan/libs/rstan.so’: The issue I am having is that when trying to load rstan through rstudio server I get the following error:Įrror: package or namespace load failed for ‘rstan’ in dyn.load(file, DLLpath = DLLpath, …): Launching R from a bash terminal then correctly uses the new version of gcc and I can install and load rstan (2.18.2) successfully. In ~/.profile I load the newer gcc version. The only available gcc version was 4.8.5, so the administrators installed gcc version 7.2.0 for me. I am trying to get rstan setup on a linux cluster (RHEL 7.6).

To be honest this is likely more of an rstudio question than an rstan question, but I am hoping there may be someone here who can help with my issue.

Rstudio linux